UniProt Q8DGB4
Photosystem I reaction center subunit XI (Q8DGB4)
Photosystem I reaction center subunit XI (UniProt Q8DGB4): 26 experimental structures and 1 predicted model on GenesisL1, 7 ligands bound, 16 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- Q8DGB4
- Protein
- Photosystem I reaction center subunit XI
- Experimental structures
- 26
- Predicted models
- 1
- Ligands
- 7
- Pockets
- 16 · 10 records with a druggable one
Structures
27 records of Q8DGB4 in the MolNFT archive: 26 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 3PCQ | Femtosecond X-ray protein Nanocrystallography | x-ray diffraction | L | — | — |
| 3PCQ | Femtosecond X-ray protein nanocrystallography | x-ray diffraction | L | — | — |
| 4FE1 | Improving the Accuracy of Macromolecular Structure Refinement at 7 A Resolution | x-ray diffraction | L | — | — |
| 4FE1 | Improving the accuracy of macromolecular structure refinement at 7 a resolution | x-ray diffraction | L | — | — |
| 5ZF0 | X-ray Structure of the Electron Transfer Complex between Ferredoxin and Photosystem I | x-ray diffraction | L1, L2, L3, L4, L6, L5 | CLA, BCR, CA | 2 (best 0.84) |
| 6LU1 | Cyanobacterial PSI Monomer from T. elongatus by Single Particle CRYO-EM at 3.2 A Resolution | electron microscopy | L | CLA, BCR | 1 (best 0.67) |
| 6LU1 | Cyanobacterial psi monomer from T. elongatus by single particle cryo- EM at 3.2 a resolution | electron microscopy | L | CLA, BCR | — |
| 6PFY | Membrane Protein Megahertz Crystallography at the European XFEL, Photosystem I at synchrotron to… | x-ray diffraction | L, U, h | CLA, BCR, CA | 1 (best 0.84) |
| 6PFY | Membrane protein megahertz crystallography at the european xfel, photosystem I at synchrotron to… | x-ray diffraction | L, U, h | CLA, BCR, CA | — |
| 6PGK | Membrane Protein Megahertz Crystallography at the European XFEL, Photosystem I XFEL at 2.9 A | x-ray diffraction | L, U, h | CLA, BCR, CA | 2 (best 0.84) |
| 6PGK | Membrane protein megahertz crystallography at the european xfel, photosystem I xfel at 2.9 a | x-ray diffraction | L, U, h | CLA, BCR, CA | — |
| 6TRA | Cryo- EM structure of the Thermosynechococcus elongatus photosystem I in the presence of cytochrome… | electron microscopy | L | CLA, LHG, BCR, CA | 1 (best 0.56) |
| 6TRA | Cryo- EM structure of the thermosynechococcus elongatus photosystem I in the presence of cytochrome… | electron microscopy | L | CLA, BCR, CA | — |
| 6TRC | Cryo- EM structure of the Thermosynechococcus elongatus photosystem I in the presence of cytochrome… | electron microscopy | L, l, 0 | CLA, BCR, CA, LHG | 1 (best 0.83) |
| 6TRC | Cryo- EM structure of the thermosynechococcus elongatus photosystem I in the presence of cytochrome… | electron microscopy | L, l, 0 | CLA, BCR, CA, LHG | — |
| 6TRD | Cryo- EM structure of the Thermosynechococcus elongatus photosystem I in the presence of cytochrome… | electron microscopy | L, l, 0 | CLA, BCR, CA, LHG | 1 (best 0.84) |
| 6TRD | Cryo- EM structure of the thermosynechococcus elongatus photosystem I in the presence of cytochrome… | electron microscopy | L, l, 0 | CLA, BCR, CA, LHG | — |
| 7BW2 | Crystal Structure of Cyanobacterial PSI Monomer from T.elongatus at 6.5 A Resolution | x-ray diffraction | L | — | 2 (best 0.61) |
| 7BW2 | Crystal structure of cyanobacterial psi monomer from T.ELONGATUS at 6.5 a resolution | x-ray diffraction | L | — | — |
| 7FIX | Cryo-EM structure of cyanobacterial photosystem I in the presence of ferredoxin and cytochrome c6 | electron microscopy | L1, L2, L3 | CLA, UNL, BCR, CA | 4 (best 0.84) |
| 7M75 | Room Temperature XFEL Crystallography reveals asymmetry in the vicinity of the two phylloqui s in… | x-ray diffraction | L | CLA, LMG, BCR, CA, DGD | 1 (best 0.55) |
| 7M75 | Room temperature xfel crystallography reveals asymmetry in the vicinity of the two phylloquinones… | x-ray diffraction | L | CLA, LMG, BCR, CA, DGD | — |
| 7M76 | Room Temperature XFEL Crystallography reveals asymmetry in the vicinity of the two phylloqui s in… | x-ray diffraction | L | CLA, LMG, BCR, CA, DGD | — |
| 7M76 | Room temperature xfel crystallography reveals asymmetry in the vicinity of the two phylloquinones… | x-ray diffraction | L | CLA, LMG, BCR, CA, DGD | — |
| 7M78 | Room Temperature XFEL Crystallography reveals asymmetry in the vicinity of the two phylloqui s in… | x-ray diffraction | L | CLA, LMG, BCR, CA, DGD | — |
| 7M78 | Room temperature xfel crystallography reveals asymmetry in the vicinity of the two phylloquinones… | x-ray diffraction | L | CLA, LMG, BCR, CA, DGD | — |
| Q8DGB4 | AlphaFold monomer V2.0 prediction for photosystem I reaction center subunit XI (Q8DGB4) | predicted | A | — | — |
Ligands
- BCR · Beta-carotene · in 20 records
- CLA · Chlorophyll A · in 20 records
- CA · Calcium ion · in 18 records
- DGD · Digalactosyl diacyl glycerol (dgdg) · in 6 records
- LMG · 1,2-distearoyl-monogalactosyl-diglyceride · in 6 records
- LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · in 5 records
- UNL · Unknown ligand · in 1 record
Experiment against prediction
- 7FIX chain L1 against the predicted model Q8DGB4: TM-score 0.99, RMSD 0.42 Å
- 3PCQ chain L against the predicted model Q8DGB4: TM-score 0.99, RMSD 0.43 Å
- 3PCQ chain L against the predicted model Q8DGB4: TM-score 0.99, RMSD 0.43 Å
- 5ZF0 chain L1 against the predicted model Q8DGB4: TM-score 0.99, RMSD 0.45 Å
- 7BW2 chain L against the predicted model Q8DGB4: TM-score 0.99, RMSD 0.48 Å
- 7BW2 chain L against the predicted model Q8DGB4: TM-score 0.99, RMSD 0.48 Å
- 6TRC chain L against the predicted model Q8DGB4: TM-score 0.99, RMSD 0.53 Å
- 6TRC chain L against the predicted model Q8DGB4: TM-score 0.99, RMSD 0.53 Å
- 7M76 chain L against the predicted model Q8DGB4: TM-score 0.98, RMSD 0.59 Å
- 7M76 chain L against the predicted model Q8DGB4: TM-score 0.98, RMSD 0.59 Å
Elsewhere
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