MolNFT v1 · #159593 · protein + DNA
Cryo-EM structure of escherichia COLI rnap polymerase bound to RPSTP2 promoter DNA
6OUL: “Cryo-EM structure of escherichia COLI rnap polymerase bound to RPSTP2 promoter DNA”. Electron microscopy, 3 ligands (1N7, ZN, MG). MolNFT v1 #159593 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6OUL
- Type
- protein + DNA
- Length
- 3,868 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A073G207, P0A8V4, U9YPW3, P0A802, Q0P6L9
- Ligands
- 1N7, ZN, MG
Structure
electron microscopy · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| G | — | protein | 231 | — | A0A073G207 |
| H | — | protein | 219 | — | A0A073G207 |
| I | — | protein | 1341 | — | P0A8V4 |
| J | — | protein | 1337 | — | U9YPW3 |
| K | — | protein | 79 | — | P0A802 |
| L | — | protein | 471 | — | Q0P6L9 |
| P | — | dna | 61 | — | — |
| Q | — | dna | 56 | — | — |
| R | — | protein | 73 | — | A0A073G207 |
Ligands and binding sites
- 1N7 · Chapso · ligand · 3 copies · chains I, J, L
- ZN · Zinc ion · metal · 2 copies · chains J
- MG · Magnesium ion · metal · chains J
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6OUL · Cryo-EM structure of Escherichia coli RNAP polymerase bound to rpsTP2 promoter DNA · the same entry in another collection · chain R against R, TM-score 1.00
- P0A802 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit omega (P0A802) · a predicted model of the same protein · chain K against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A073G207
- Every structure of UniProt P0A8V4
- Every structure of UniProt U9YPW3
- Every structure of UniProt P0A802
- Every structure of UniProt Q0P6L9
- Elsewhere: RCSB PDB 6OUL · PDBe 6OUL · UniProt A0A073G207 · UniProt P0A8V4 · UniProt U9YPW3 · UniProt P0A802 · UniProt Q0P6L9
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