MolNFT v1 · #159449 · protein
Symmetric model of CD4- and 17-bound B41 HIV-1 env sosip in complex with ddm
6OPO: “Symmetric model of CD4- and 17-bound B41 HIV-1 env sosip in complex with ddm”. Electron microscopy, 3 ligands (NAG, BMA, MAN). MolNFT v1 #159449 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6OPO
- Type
- protein
- Length
- 2,565 residues
- Chains
- 15
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B3UES2, B3UEZ6, P01730
- Ligands
- NAG, BMA, MAN
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D, J | — | protein | 384 | — | B3UES2 |
| L, E, K | — | protein | 110 | — | — |
| B, F, M | — | protein | 137 | — | B3UEZ6 |
| C, G, N | — | protein | 97 | — | P01730 |
| H, I, O | — | protein | 127 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 78 copies · chains A, D, J, B, F, M
- BMA · beta-D-mannopyranose · sugar · 6 copies
- MAN · alpha-D-mannopyranose · sugar · 6 copies · chains A, D, J
- LMT · Dodecyl-beta-D-maltoside · additive · 3 copies · chains B, M, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6OPO · Symmetric model of CD4- and 17-bound B41 HIV-1 Env SOSIP in complex with DDM · the same entry in another collection · chain O against O, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3UES2
- Every structure of UniProt B3UEZ6
- Every structure of UniProt P01730
- Elsewhere: RCSB PDB 6OPO · PDBe 6OPO · UniProt B3UES2 · UniProt B3UEZ6 · UniProt P01730
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