MolNFT v1 · #159291 · protein
B41 SOSIP.664 in complex with the silent-face antibody SF12 and V3- targeting antibody 10-1074
6OKP: “B41 SOSIP.664 in complex with the silent-face antibody SF12 and V3- targeting antibody 10-1074”. Electron microscopy, 3 ligands (NAG, MAN, BMA). MolNFT v1 #159291 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6OKP
- Type
- protein
- Length
- 2,660 residues
- Chains
- 14
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B3UEZ6, B3UES2, S6B291, Q8N5F4, P01834
- Ligands
- NAG, MAN, BMA
Structure
electron microscopy · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 118 | — | B3UEZ6 |
| D, F | — | protein | 456 | — | B3UES2 |
| E | — | protein | 455 | — | B3UES2 |
| K | — | protein | 133 | — | S6B291 |
| L | — | protein | 101 | — | Q8N5F4 |
| M, O, Q | — | protein | 131 | — | S6B291 |
| N, P, R | — | protein | 104 | — | P01834 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 95 copies · chains D, M, E, O, K, L, F, Q, A, B, C
- MAN · alpha-D-mannopyranose · sugar · 46 copies · chains M, D, N, P, O, K, L, Q, R, F
- BMA · beta-D-mannopyranose · sugar · 16 copies · chains M, D, O, E, K, Q, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6OKP · B41 SOSIP.664 in complex with the silent-face antibody SF12 and V3-targeting antibody… · the same entry in another collection · chain R against R, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3UEZ6
- Every structure of UniProt B3UES2
- Every structure of UniProt S6B291
- Every structure of UniProt Q8N5F4
- Every structure of UniProt P01834
- Elsewhere: RCSB PDB 6OKP · PDBe 6OKP · UniProt B3UEZ6 · UniProt B3UES2 · UniProt S6B291 · UniProt Q8N5F4 · UniProt P01834
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