MolNFT v1 · #158015 · protein
Rhodobacter sphaeroides mitochondrial respiratory chain complex
6NHG: “Rhodobacter sphaeroides mitochondrial respiratory chain complex”. X-ray diffraction, 8 ligands (CDL, 6PE, HEM). MolNFT v1 #158015 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6NHG
- Type
- protein
- Length
- 2,080 residues
- Chains
- 11
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P31800, P23004, P00157, P00125, P13272, P00129, P13271, P00126, P00130, P07552
- Ligands
- CDL, 6PE, HEM, AZO, 8PE, HEC, FES, MC3
Structure
x-ray diffraction · 11 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 446 | — | P31800 |
| B | — | protein | 425 | — | P23004 |
| C | — | protein | 378 | — | P00157 |
| D | — | protein | 241 | — | P00125 |
| E | — | protein | 196 | — | P13272 |
| F | — | protein | 105 | — | P00129 |
| G | — | protein | 75 | — | P13271 |
| H | — | protein | 67 | — | P00126 |
| I | — | protein | 34 | — | P13272 |
| J | — | protein | 61 | — | P00130 |
| K | — | protein | 52 | — | P07552 |
Ligands and binding sites
- CDL · Cardiolipin · ligand · 3 copies · chains A, C, D, F, G
- 6PE · 1,2-dihexanoyl-sn-glycero-3-phosphoethanolamine · ligand · 2 copies · chains A, C, K
- HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains C
- AZO · Methyl (2Z)-2-(2-{[6-(2-cyanophenoxy)pyrimidin-4-yl]oxy}phenyl)-3-methoxyacrylate · ligand · chains C
- 8PE · (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate · ligand · chains C, F, G
- HEC · Heme C · ligand · chains D
- FES · Fe2/s2 (inorganic) cluster · ligand · chains E
- MC3 · 1,2-dimyristoyl-rac-glycero-3-phosphocholine · ligand · chains A, C, J, K
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P31800
- Every structure of UniProt P23004
- Every structure of UniProt P00157
- Every structure of UniProt P00125
- Every structure of UniProt P13272
- Every structure of UniProt P00129
- Every structure of UniProt P13271
- Every structure of UniProt P00126
- Every structure of UniProt P00130
- Every structure of UniProt P07552
- Elsewhere: RCSB PDB 6NHG · PDBe 6NHG · UniProt P31800 · UniProt P23004 · UniProt P00157 · UniProt P00125 · UniProt P13272 · UniProt P00129 · UniProt P13271 · UniProt P00126 · UniProt P00130 · UniProt P07552
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