MolNFT v1 · #157643 · protein
Crystal structure of the SNX5 px domain in complex with the ci-mpr (space group P212121 - form 1)
6N5Y · Sorting nexin-5,CATION-independent mannose-6-phosphate…: “Crystal structure of the SNX5 px domain in complex with the ci-mpr (space group P212121 - form 1)”. X-ray diffraction, 1 pocket (best druggability 0.34). MolNFT v1 #157643 on…
- PDB
- 6N5Y
- Type
- protein
- Length
- 162 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sorting nexin-5,CATION-independent mannose-6-phosphate receptor
- UniProt
- Q9Y5X3, P11717
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sorting nexin-5,CATION-independent mannose-6-phosphate receptor | protein | 162 | 46% helix, 26% strand | Q9Y5X3, P11717 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 64 | 0.34 | 0.77 | 14 | empty |
Compared structures
- 6N5Y · Crystal structure of the SNX5 PX domain in complex with the CI-MPR (space group P212121… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Y5X3 · AlphaFold monomer V2.0 prediction for sorting nexin-5 (Q9Y5X3) · a predicted model of the same protein · chain A against A, TM-score 0.87
- P11717 · AlphaFold monomer V2.0 prediction for cation-independent mannose-6-phosphate receptor… · a predicted model of the same protein · chain A against A, TM-score 0.35
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y5X3
- Every structure of UniProt P11717
- Elsewhere: RCSB PDB 6N5Y · PDBe 6N5Y · UniProt Q9Y5X3 · UniProt P11717
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