MolNFT v1 · #157642 · protein
Crystal structure of the SNX5 px domain in complex with the ci-mpr (space group P212121 - form 1)
6N5X: “Crystal structure of the SNX5 px domain in complex with the ci-mpr (space group P212121 - form 1)”. X-ray diffraction, 1 ligand (JEF). MolNFT v1 #157642 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6N5X
- Type
- protein
- Length
- 168 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9Y5X3, P11717
- Ligands
- JEF
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 168 | — | Q9Y5X3, P11717 |
Ligands and binding sites
- JEF · O-(O-(2-aminopropyl)-O'-(2-methoxyethyl)polypropylene glycol 500) · ligand · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6N5X · Crystal structure of the SNX5 PX domain in complex with the CI-MPR (space group P212121… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Y5X3 · AlphaFold monomer V2.0 prediction for sorting nexin-5 (Q9Y5X3) · a predicted model of the same protein · chain A against A, TM-score 0.83
- P11717 · AlphaFold monomer V2.0 prediction for cation-independent mannose-6-phosphate receptor… · a predicted model of the same protein · chain A against A, TM-score 0.39
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y5X3
- Every structure of UniProt P11717
- Elsewhere: RCSB PDB 6N5X · PDBe 6N5X · UniProt Q9Y5X3 · UniProt P11717
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