MolNFT v1 · #157204 · protein + DNA
Crystal structure of H.PYLORI nikr in complex with DNA
6MRJ: “Crystal structure of H.PYLORI nikr in complex with DNA”. X-ray diffraction, 2 ligands (NI, MG). MolNFT v1 #157204 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6MRJ
- Type
- protein + DNA
- Length
- 628 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O25896
- Ligands
- NI, MG
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 134 | — | O25896 |
| B, C | — | protein | 142 | — | O25896 |
| D | — | protein | 138 | — | O25896 |
| L | — | dna | 36 | — | — |
| M | — | dna | 36 | — | — |
Ligands and binding sites
- NI · Nickel (II) ion · metal · 4 copies · chains A, D, B, C
- MG · Magnesium ion · metal · 2 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6MRJ · Crystal structure of H.pylori NikR in complex with DNA · the same entry in another collection · chain M against M, TM-score 1.00
- O25896 · AlphaFold monomer V2.0 prediction for putative nickel-responsive regulator (O25896) · a predicted model of the same protein · chain B against A, TM-score 0.75
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O25896
- Elsewhere: RCSB PDB 6MRJ · PDBe 6MRJ · UniProt O25896
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