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MolNFT v1 · #155990 · protein

A2AR crystallized in EROCOC17+4, lcp-sfx at 293 K

6LPK · Adenosine receptor A2A,SOLUBLE cytochrome B562,ADENOSINE…: “A2AR crystallized in EROCOC17+4, lcp-sfx at 293 K”. X-ray diffraction, 9 ligands (MYS, TRD, CLR), 4 pockets (best druggability 0.76). MolNFT v1 #155990 on GenesisL1: 3D…

PDB
6LPK
Type
protein
Length
390 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Adenosine receptor A2A,SOLUBLE cytochrome B562,ADENOSINE receptor A2A
UniProt
P29274, P0ABE7
Ligands
MYS, TRD, CLR, 8K6, ER0, ZMA, D12, D10, NA
Pockets
4 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 86% helix, 2% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AAdenosine receptor A2A,SOLUBLE cytochrome B562,ADENOSINE receptor A2Aprotein39086% helix, 2% strandP29274, P0ABE7

Ligands and binding sites

  • MYS · Pentadecane · ligand · 6 copies · chains A
  • TRD · Tridecane · ligand · 4 copies · chains A
  • CLR · Cholesterol · ligand · 3 copies · chains A
  • 8K6 · Octadecane · ligand · 3 copies · chains A
  • ER0 · [(2~{R},3~{S})-2,3,4-tris(oxidanyl)butyl] (5~{R},9~{R}, 13~{R})-5,9,13,17-tetramethyloctadecanoate · ligand · 2 copies · chains A
  • ZMA · 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-A][1,3, 5]triazin-5-yl)amino]ethyl}phenol · ligand · chains A
  • D12 · Dodecane · ligand · chains A
  • D10 · Decane · ligand · chains A
  • NA · Sodium ion · metal · chains A
  • OCT · N-octane · additive · 3 copies · chains A
  • HEX · Hexane · additive
  • UND · Undecane · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
12720.760.8934ZMA
21810.490.7622empty
31320.400.7417empty
4680.370.7715D10

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

  • 6LPK · A2AR crystallized in EROCOC17+4, LCP-SFX at 293 K · the same entry in another collection · chain A against A, TM-score 1.00
  • P29274 · AlphaFold monomer V2.0 prediction for adenosine receptor A2A (P29274) · a predicted model of the same protein · chain A against A, TM-score 0.78
  • P0ABE7 · AlphaFold monomer V2.0 prediction for soluble cytochrome B562 (P0ABE7) · a predicted model of the same protein · chain A against A, TM-score 0.26

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