MolNFT v1 · #155126 · protein

Cryo-EM structure of human IgM-Fc in complex with the J chain and the ectodomain of pigr

6KXS: “Cryo-EM structure of human IgM-Fc in complex with the J chain and the ectodomain of pigr”. Electron microscopy, 1 ligand (NAG). MolNFT v1 #155126 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6KXS
Type: protein
Length: 2,869 residues
Chains: 12
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P01871, P01591, P01833
Ligands: NAG

Structure

electron microscopy · 10 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	232	—	P01871
B	—	protein	227	—	P01871
C	—	protein	225	—	P01871
D, E, G	—	protein	224	—	P01871
F	—	protein	221	—	P01871
H	—	protein	230	—	P01871
K	—	protein	230	—	P01871
L	—	protein	228	—	P01871
J	—	protein	106	—	P01591
P	—	protein	498	—	P01833

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 12 copies · chains J, A, B, C, D, E, F, G, H, K, L

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6KXS · Cryo-EM structure of human IgM-Fc in complex with the J chain and the ectodomain of pIgR · the same entry in another collection · chain P against P, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P01871
Every structure of UniProt P01591
Every structure of UniProt P01833
Elsewhere: RCSB PDB 6KXS · PDBe 6KXS · UniProt P01871 · UniProt P01591 · UniProt P01833

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