Research workbench
Cryo-EM structure of human IgM-Fc in complex with the J chain and the ectodomain of pigr
Analyse Cryo-EM structure of human IgM-Fc in complex with the J chain and the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6KXS
- Type
- protein
- Length
- 2,869 residues
- Chains
- 12
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P01871, P01591, P01833
- Ligands
- NAG
Structure
electron microscopy · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 232 | — | P01871 |
| B | — | protein | 227 | — | P01871 |
| C | — | protein | 225 | — | P01871 |
| D, E, G | — | protein | 224 | — | P01871 |
| F | — | protein | 221 | — | P01871 |
| H | — | protein | 230 | — | P01871 |
| K | — | protein | 230 | — | P01871 |
| L | — | protein | 228 | — | P01871 |
| J | — | protein | 106 | — | P01591 |
| P | — | protein | 498 | — | P01833 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 12 copies · chains J, A, B, C, D, E, F, G, H, K, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6KXS · Cryo-EM structure of human IgM-Fc in complex with the J chain and the ectodomain of pIgR · the same entry in another collection · chain P against P, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01871
- Every structure of UniProt P01591
- Every structure of UniProt P01833
- Elsewhere: RCSB PDB 6KXS · PDBe 6KXS · UniProt P01871 · UniProt P01591 · UniProt P01833
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