GL1X · GenesisL1 explorer

MolNFT v1 · #151685 · protein

Yeast 20S proteasome with human BETA2I (1-53) in complex with onx 0914

6HV4: “Yeast 20S proteasome with human BETA2I (1-53) in complex with onx 0914”. X-ray diffraction, 4 ligands (GQK, MG, CL). MolNFT v1 #151685 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6HV4
Type
protein
Length
6,319 residues
Chains
28
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P23639, P23638, P40303, P32379, P40302, P21242, P21243, P40306, P25043, P25451, P22141, P30656, P23724, P30657, P38624
Ligands
GQK, MG, CL, SO4

Structure

x-ray diffraction · 15 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, O—protein250—P23639
B, P—protein244—P23638
C, Q—protein240—P40303
D, R—protein235—P32379
E, S—protein231—P40302
F, T—protein243—P21242
G, U—protein241—P21243
H—protein226—P40306, P25043
I, W—protein204—P25451
J, X—protein195—P22141
K, Y—protein212—P30656
L, Z—protein222—P23724
M, a—protein222—P30657
N, b—protein196—P38624
V—protein223—P40306, P25043

Ligands and binding sites

  • GQK · (2~{S})-3-(4-methoxyphenyl)-~{N}-[(2~{S},3~{R})-4-methyl-3,4-bis(oxidanyl)-1-phenyl-pentan-2-yl]-2-[[(2~{S})-2-(2-morpholin-4-ylethanoylamino) propanoyl]amino]propanamide · ligand · 6 copies · chains H, I, K, L, N, V, W, Y, Z, b
  • MG · Magnesium ion · metal · 8 copies · chains G, I, K, W, N, a, L, V, Y, H, Z
  • CL · Chloride ion · ion · 2 copies · chains G, H, U, V
  • SO4 · Sulfate ion · ion · 2 copies · chains N, b
  • MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 4 copies · chains H, Z, J, K, L, V, X, Y

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6HV4 · Yeast 20S proteasome with human beta2i (1-53) in complex with ONX 0914 · the same entry in another collection · chain K against K, TM-score 1.00

Analyse

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.