MolNFT v1 · #150903 · protein
Activated turkey BETA1 adrenoceptor with bound partial agonist xamoterol and nanobody NB6B9
6H7N: “Activated turkey BETA1 adrenoceptor with bound partial agonist xamoterol and nanobody NB6B9”. X-ray diffraction, 3 ligands (2CV, FVK, NA). MolNFT v1 #150903 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6H7N
- Type
- protein
- Length
- 1,031 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0AA25, P07700
- Ligands
- 2CV, FVK, NA
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| E | — | protein | 107 | — | P0AA25 |
| A | — | protein | 291 | — | P07700 |
| F | — | protein | 107 | — | P0AA25 |
| B | — | protein | 285 | — | P07700 |
| C | — | protein | 120 | — | — |
| D | — | protein | 121 | — | — |
Ligands and binding sites
- 2CV · Hega-10 · ligand · 5 copies · chains A, B
- FVK · ~{N}-[2-[[(2~{S})-2-oxidanyl-3-(4-oxidanylphenoxy) propyl]amino]ethyl]morpholine-4-carboxamide · ligand · 2 copies · chains A, B
- NA · Sodium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6H7N · ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND PARTIAL AGONIST XAMOTEROL AND NANOBODY… · the same entry in another collection · chain D against D, TM-score 1.00
- P0AA25 · AlphaFold monomer V2.0 prediction for thioredoxin 1 (P0AA25) · a predicted model of the same protein · chain F against A, TM-score 0.97
- P07700 · AlphaFold monomer V2.0 prediction for beta-1 adrenergic receptor (P07700) · a predicted model of the same protein · chain B against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AA25
- Every structure of UniProt P07700
- Elsewhere: RCSB PDB 6H7N · PDBe 6H7N · UniProt P0AA25 · UniProt P07700
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