MolNFT v1 · #148686 · protein

NMR structure of the second tpr domain of the human RPAP3 protein in complex with HSP70 peptide sgptieevd

6FDT · RNA polymerase II-associated protein 3: “NMR structure of the second tpr domain of the human RPAP3 protein in complex with HSP70 peptide sgptieevd”. Solution nmr. MolNFT v1 #148686 on GenesisL1: 3D structure, binding sites and…

PDB: 6FDT
Type: protein
Length: 129 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA polymerase II-associated protein 3; Heat shock 70 kda protein 1B
UniProt: Q9H6T3, P0DMV9

Structure

solution nmr · 2 distinct chains · 72% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA polymerase II-associated protein 3	protein	120	78% helix, 0% strand	Q9H6T3
B	Heat shock 70 kda protein 1B	protein	9	0% helix, 0% strand	P0DMV9

Interfaces

1 interface between chains.

A–B · 537 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

6FDT · NMR structure of the second TPR domain of the human RPAP3 protein in complex with HSP70… · the same entry in another collection · chain A against A, TM-score 1.00
Q9H6T3 · AlphaFold monomer V2.0 prediction for RNA polymerase II-associated protein 3 (Q9H6T3) · a predicted model of the same protein · chain A against A, TM-score 0.96
P0DMV9 · AlphaFold monomer V2.0 prediction for heat shock 70 kda protein 1B (P0DMV9) · a predicted model of the same protein · chain B against A, TM-score 0.36

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9H6T3
Every structure of UniProt P0DMV9
Elsewhere: RCSB PDB 6FDT · PDBe 6FDT · UniProt Q9H6T3 · UniProt P0DMV9

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