Research workbench
NMR structure of the second tpr domain of the human RPAP3 protein in complex with HSP70 peptide sgptieevd
Analyse NMR structure of the second tpr domain of the human RPAP3 protein in complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6FDT
- Type
- protein
- Length
- 129 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA polymerase II-associated protein 3; Heat shock 70 kda protein 1B
- UniProt
- Q9H6T3, P0DMV9
Structure
solution nmr · 2 distinct chains · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase II-associated protein 3 | protein | 120 | 78% helix, 0% strand | Q9H6T3 |
| B | Heat shock 70 kda protein 1B | protein | 9 | 0% helix, 0% strand | P0DMV9 |
Interfaces
1 interface between chains.
- A–B · 537 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 6FDT · NMR structure of the second TPR domain of the human RPAP3 protein in complex with HSP70… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9H6T3 · AlphaFold monomer V2.0 prediction for RNA polymerase II-associated protein 3 (Q9H6T3) · a predicted model of the same protein · chain A against A, TM-score 0.96
- P0DMV9 · AlphaFold monomer V2.0 prediction for heat shock 70 kda protein 1B (P0DMV9) · a predicted model of the same protein · chain B against A, TM-score 0.36
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9H6T3
- Every structure of UniProt P0DMV9
- Elsewhere: RCSB PDB 6FDT · PDBe 6FDT · UniProt Q9H6T3 · UniProt P0DMV9
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