MolNFT v1 · #147586 · protein
E. COLI hydrogenase-2 chemically reduced structure
6EHS: “E. COLI hydrogenase-2 chemically reduced structure”. X-ray diffraction, 6 ligands (SF4, DTN, F3S). MolNFT v1 #147586 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6EHS
- Type
- protein
- Length
- 1,637 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P69741, P0ACE0
- Ligands
- SF4, DTN, F3S, FCO, NI, MG
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| S | — | protein | 267 | — | P69741 |
| L, M | — | protein | 551 | — | P0ACE0 |
| T | — | protein | 268 | — | P69741 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · 4 copies · chains S, L, T, M
- DTN · Dithionite · ligand · 4 copies · chains S, L, M, T
- F3S · FE3-S4 cluster · ligand · 2 copies · chains S, L, T, M
- FCO · Carbonmonoxide-(dicyano) iron · ligand · 2 copies · chains L, M
- NI · Nickel (II) ion · metal · 2 copies · chains L, M
- MG · Magnesium ion · metal · 2 copies · chains L, M
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6EHS · E. coli Hydrogenase-2 chemically reduced structure · the same entry in another collection · chain S against S, TM-score 1.00
- P0ACE0 · AlphaFold monomer V2.0 prediction for hydrogenase-2 large chain (P0ACE0) · a predicted model of the same protein · chain L against A, TM-score 1.00
- P69741 · AlphaFold monomer V2.0 prediction for hydrogenase-2 small chain (P69741) · a predicted model of the same protein · chain S against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P69741
- Every structure of UniProt P0ACE0
- Elsewhere: RCSB PDB 6EHS · PDBe 6EHS · UniProt P69741 · UniProt P0ACE0
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