MolNFT v1 · #147462 · protein
B41 SOSIP.664 in complex with soluble CD4 (D1-D2), the co-receptor mimicking antibody 21C and the broadly neutralizing antibody 8ANC195
6EDU: “B41 SOSIP.664 in complex with soluble CD4 (D1-D2), the co-receptor mimicking antibody 21C and the broadly…”. Electron microscopy, 3 ligands (NAG, MAN, BMA). MolNFT v1 #147462 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6EDU
- Type
- protein
- Length
- 3,261 residues
- Chains
- 21
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B3UEZ6, B3UES2, P01730
- Ligands
- NAG, MAN, BMA
Structure
electron microscopy · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 116 | — | B3UEZ6 |
| D, E, F | — | protein | 401 | — | B3UES2 |
| G, H, I | — | protein | 97 | — | P01730 |
| J, L, N | — | protein | 124 | — | — |
| K, M, O | — | protein | 111 | — | — |
| P, R, T | — | protein | 131 | — | — |
| Q, S, U | — | protein | 107 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 81 copies · chains A, S, R, B, Q, P, C, U, T, D, L, M, E, N, O, F, J, K
- MAN · alpha-D-mannopyranose · sugar · 30 copies · chains D, R, E, T, F, P
- BMA · beta-D-mannopyranose · sugar · 12 copies · chains R, T, P
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6EDU · B41 SOSIP.664 in complex with soluble CD4 (D1-D2), the co-receptor mimicking antibody 21c… · the same entry in another collection · chain U against U, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3UEZ6
- Every structure of UniProt B3UES2
- Every structure of UniProt P01730
- Elsewhere: RCSB PDB 6EDU · PDBe 6EDU · UniProt B3UEZ6 · UniProt B3UES2 · UniProt P01730
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