MolNFT v1 · #147217 · protein

Structure of BETA2 adrenergic receptor fused to a gs peptide

6E67 · Beta-2 adrenergic RECEPTOR,ENDOLYSIN,GUANINE nucleotide…: “Structure of BETA2 adrenergic receptor fused to a gs peptide”. X-ray diffraction, 1 ligand (P0G), 10 pockets (best druggability 0.77). MolNFT v1 #147217 on GenesisL1: 3D…

PDB: 6E67
Type: protein
Length: 933 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-2 adrenergic RECEPTOR,ENDOLYSIN,GUANINE nucleotide- binding protein G(S) subunit…
EC: 3.2.1.17
UniProt: P07550, A0A097J809, P63092
Ligands: P0G
Pockets: 10 · best druggability 0.77

Structure

x-ray diffraction · 2 distinct chains · 74% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-2 adrenergic RECEPTOR,ENDOLYSIN,GUANINE nucleotide- binding protein G(S) subunit alpha isoforms SHORT,BETA-2 adrenergic receptor chimera (EC 3.2.1.17)	protein	457	76% helix, 3% strand	P07550, A0A097J809, P63092
B	Beta-2 adrenergic RECEPTOR,ENDOLYSIN,GUANINE nucleotide- binding protein G(S) subunit alpha isoforms SHORT,BETA-2 adrenergic receptor chimera (EC 3.2.1.17)	protein	476	73% helix, 3% strand	P07550, A0A097J809, P63092

Ligands and binding sites

P0G · 8-[(1R)-2-{[1,1-dimethyl-2-(2-methylphenyl) ethyl]amino}-1-hydroxyethyl]-5-hydroxy-2H-1,4-benzoxazin-3(4H)-one · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

10 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	509	0.77	0.84	52	P0G
2	500	0.77	0.84	60	P0G
3	1066	0.73	0.76	65	empty
4	225	0.66	0.84	37	empty
5	417	0.65	0.78	58	empty

Interfaces

1 interface between chains.

A–B · 1152 Å² buried · 3 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 disulfide (disulfide).

Compared structures

6E67 · Structure of beta2 adrenergic receptor fused to a Gs peptide · the same entry in another collection · chain A against A, TM-score 1.00
P07550 · AlphaFold monomer V2.0 prediction for beta-2 adrenergic receptor (P07550) · a predicted model of the same protein · chain A against A, TM-score 0.64
P63092 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(S) subunit… · a predicted model of the same protein · chain A against A, TM-score 0.25

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P07550
Every structure of UniProt A0A097J809
Every structure of UniProt P63092
Elsewhere: RCSB PDB 6E67 · PDBe 6E67 · UniProt P07550 · UniProt A0A097J809 · UniProt P63092

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