MolNFT v1 · #146351 · protein
Structure of human COQ9 protein with bound isoprene.
6DEW: “Structure of human COQ9 protein with bound isoprene.”. X-ray diffraction, 5 ligands (64Z, N1S, FOF). MolNFT v1 #146351 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DEW
- Type
- protein
- Length
- 1,138 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O75208
- Ligands
- 64Z, N1S, FOF, FOH, SO4
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 195 | — | O75208 |
| B | — | protein | 191 | — | O75208 |
| C | — | protein | 188 | — | O75208 |
| D | — | protein | 189 | — | O75208 |
| E | — | protein | 191 | — | O75208 |
| F | — | protein | 184 | — | O75208 |
Ligands and binding sites
- 64Z · Geraniol · ligand · 3 copies · chains A, F, B, D
- N1S · (2Z,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol · ligand · chains A
- FOF · (2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol · ligand · chains A
- FOH · (2Z,6Z)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol · ligand · chains B, D, E
- SO4 · Sulfate ion · ion · 5 copies · chains A, B, D, C, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6DEW · Structure of human COQ9 protein with bound isoprene. · the same entry in another collection · chain F against F, TM-score 1.00
- O75208 · AlphaFold monomer V2.0 prediction for ubiquinone biosynthesis protein COQ9, mitochondrial… · a predicted model of the same protein · chain B against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O75208
- Elsewhere: RCSB PDB 6DEW · PDBe 6DEW · UniProt O75208
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