MolNFT v1 · #146331 · protein
Crystal structure of bos taurus ARP2/3 complex binding with C-terminus of homo sapiens SPIN90
6DEC: “Crystal structure of bos taurus ARP2/3 complex binding with C-terminus of homo sapiens SPIN90”. X-ray diffraction, 2 ligands (ATP, CA). MolNFT v1 #146331 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DEC
- Type
- protein
- Length
- 4,070 residues
- Chains
- 18
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P61157, A7MB62, Q58CQ2, Q3MHR7, Q3T035, Q148J6, Q3SYX9, Q9NZQ3
- Ligands
- ATP, CA
Structure
x-ray diffraction · 18 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 398 | — | P61157 |
| B | — | protein | 369 | — | A7MB62 |
| C | — | protein | 339 | — | Q58CQ2 |
| D | — | protein | 279 | — | Q3MHR7 |
| E | — | protein | 163 | — | Q3T035 |
| F | — | protein | 165 | — | Q148J6 |
| G | — | protein | 116 | — | Q3SYX9 |
| M | — | protein | 329 | — | Q9NZQ3 |
| H | — | protein | 386 | — | P61157 |
| I | — | protein | 209 | — | A7MB62 |
| J | — | protein | 258 | — | Q58CQ2 |
| K | — | protein | 283 | — | Q3MHR7 |
| L | — | protein | 138 | — | Q3T035 |
| N | — | protein | 163 | — | Q148J6 |
| O | — | protein | 132 | — | Q3SYX9 |
| P | — | protein | 328 | — | Q9NZQ3 |
| Q | — | protein | 6 | — | — |
| R | — | protein | 9 | — | — |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 4 copies · chains A, B, H, I
- CA · Calcium ion · metal · 4 copies · chains H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- Q58CQ2 · AlphaFold monomer V2.0 prediction for actin-related protein 2/3 complex subunit 1B… · a predicted model of the same protein · chain C against A, TM-score 0.99
- Q3MHR7 · AlphaFold monomer V2.0 prediction for actin-related protein 2/3 complex subunit 2 (Q3MHR7) · a predicted model of the same protein · chain D against A, TM-score 0.98
- P61157 · AlphaFold monomer V2.0 prediction for actin-related protein 3 (P61157) · a predicted model of the same protein · chain A against A, TM-score 0.97
- A7MB62 · AlphaFold monomer V2.0 prediction for actin-related protein 2 (A7MB62) · a predicted model of the same protein · chain B against A, TM-score 0.97
- Q3SYX9 · AlphaFold monomer V2.0 prediction for actin-related protein 2/3 complex subunit 5 (Q3SYX9) · a predicted model of the same protein · chain G against A, TM-score 0.97
- Q148J6 · AlphaFold monomer V2.0 prediction for actin-related protein 2/3 complex subunit 4 (Q148J6) · a predicted model of the same protein · chain N against A, TM-score 0.97
- Q3T035 · AlphaFold monomer V2.0 prediction for actin-related protein 2/3 complex subunit 3 (Q3T035) · a predicted model of the same protein · chain E against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P61157
- Every structure of UniProt A7MB62
- Every structure of UniProt Q58CQ2
- Every structure of UniProt Q3MHR7
- Every structure of UniProt Q3T035
- Every structure of UniProt Q148J6
- Every structure of UniProt Q3SYX9
- Every structure of UniProt Q9NZQ3
- Elsewhere: RCSB PDB 6DEC · PDBe 6DEC · UniProt P61157 · UniProt A7MB62 · UniProt Q58CQ2 · UniProt Q3MHR7 · UniProt Q3T035 · UniProt Q148J6 · UniProt Q3SYX9 · UniProt Q9NZQ3
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