MolNFT v1 · #146258 · protein
Crystal structure of human ubiquitin activating enzyme E1 (UBA1) in complex with ubiquitin
6DC6: “Crystal structure of human ubiquitin activating enzyme E1 (UBA1) in complex with ubiquitin”. X-ray diffraction, 2 ligands (POP, MG). MolNFT v1 #146258 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DC6
- Type
- protein
- Length
- 2,140 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P22314, P62979
- Ligands
- POP, MG
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 992 | — | P22314 |
| B, D | — | protein | 76 | — | P62979 |
| C | — | protein | 996 | — | P22314 |
Ligands and binding sites
- POP · Pyrophosphate 2- · ligand · 2 copies · chains A, B, C, D
- MG · Magnesium ion · metal · 4 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6DC6 · Crystal structure of human ubiquitin activating enzyme E1 (Uba1) in complex with ubiquitin · the same entry in another collection · chain A against A, TM-score 1.00
- P22314 · AlphaFold monomer V2.0 prediction for ubiquitin-like modifier- activating enzyme 1… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P22314
- Every structure of UniProt P62979
- Elsewhere: RCSB PDB 6DC6 · PDBe 6DC6 · UniProt P22314 · UniProt P62979
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