MolNFT v1 · #145205 · protein
Xfel crystal structure of a natively-glycosylated BG505 SOSIP.664 HIV- 1 envelope trimer in complex with the broadly-neutralizing antibodies BG18 and 35O22
6CH7: “Xfel crystal structure of a natively-glycosylated BG505 SOSIP.664 HIV- 1 envelope trimer in complex with the…”. X-ray diffraction, 5 ligands (NAG, MAN, BMA). MolNFT v1 #145205 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6CH7
- Type
- protein
- Length
- 1,467 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2N0S7, Q2N0S6
- Ligands
- NAG, MAN, BMA, FUC, GAL
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 134 | — | Q2N0S7 |
| D | — | protein | 226 | — | — |
| E | — | protein | 213 | — | — |
| G | — | protein | 452 | — | Q2N0S6 |
| Q | — | protein | 231 | — | — |
| R | — | protein | 211 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 33 copies · chains B, D, G, E, Q
- MAN · alpha-D-mannopyranose · sugar · 31 copies · chains D, E, G, R, Q
- BMA · beta-D-mannopyranose · sugar · 13 copies · chains D, E, Q
- FUC · alpha-L-fucopyranose · sugar · 3 copies · chains B, D, G
- GAL · beta-D-galactopyranose · sugar
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CH7 · XFEL crystal structure of a natively-glycosylated BG505 SOSIP.664 HIV-1 Envelope Trimer… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S7
- Every structure of UniProt Q2N0S6
- Elsewhere: RCSB PDB 6CH7 · PDBe 6CH7 · UniProt Q2N0S7 · UniProt Q2N0S6
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