MolNFT v1 · #142598 · protein

Ternary complex crystal structure of dch with dcmp and thf

6A9A · Deoxycytidylate 5-hydroxymethyltransferase: “Ternary complex crystal structure of dch with dcmp and thf”. X-ray diffraction, 3 ligands (DCM, THG, IOD), 1 pocket (best druggability 0.71). MolNFT v1 #142598 on GenesisL1: 3D structure…

PDB: 6A9A
Type: protein
Length: 246 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Deoxycytidylate 5-hydroxymethyltransferase
EC: 2.1.2.8
UniProt: P08773
Ligands: DCM, THG, IOD
Pockets: 1 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Deoxycytidylate 5-hydroxymethyltransferase (EC 2.1.2.8)	protein	246	41% helix, 22% strand	P08773

Ligands and binding sites

DCM · 2'-deoxycytidine-5'-monophosphate · ligand · chains A
THG · (6S)-5,6,7,8-tetrahydrofolate · ligand · chains A
IOD · Iodide ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	446	0.71	0.81	40	DCM, THG

Compared structures

6A9A · Ternary complex crystal structure of dCH with dCMP and THF · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P08773
Elsewhere: RCSB PDB 6A9A · PDBe 6A9A · UniProt P08773

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.