MolNFT v1 · #140604 · protein
Crystal structure of ribose-1,5-bisphosphate isomerase from pyrococcus horikoshii OT3 in complex with ribulose-1,5-bisphosphate and gmp
5YG5: “Crystal structure of ribose-1,5-bisphosphate isomerase from pyrococcus horikoshii OT3 in complex with…”. X-ray diffraction, 3 ligands (G, RUB, K). MolNFT v1 #140604 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YG5
- Type
- protein
- Length
- 966 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O57947
- Ligands
- G, RUB, K
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 322 | — | O57947 |
Ligands and binding sites
- G · Guanosine-5'-monophosphate · ligand · 5 copies · chains B, A, C
- RUB · Ribulose-1,5-diphosphate · ligand · 3 copies · chains A, B, C
- K · Potassium ion · metal · 3 copies · chains A, B, C
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YG5 · Crystal structure of ribose-1,5-bisphosphate isomerase from Pyrococcus horikoshii OT3 in… · the same entry in another collection · chain A against A, TM-score 1.00
- O57947 · AlphaFold monomer V2.0 prediction for ribose 1,5-bisphosphate isomerase (O57947) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O57947
- Elsewhere: RCSB PDB 5YG5 · PDBe 5YG5 · UniProt O57947
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