MolNFT v1 · #139543 · protein
T. thermophilus RNA polymerase holoenzyme bound with GP39 and GP76
5XJ0: “T. thermophilus RNA polymerase holoenzyme bound with GP39 and GP76”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #139543 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XJ0
- Type
- protein
- Length
- 3,693 residues
- Chains
- 9
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q5SHR6, Q8RQE9, Q8RQE8, Q8RQE7, Q5SKW1, A7XX65, A7XXA7
- Ligands
- ZN
Structure
x-ray diffraction · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 225 | — | Q5SHR6 |
| B | — | protein | 232 | — | Q5SHR6 |
| C | — | protein | 1114 | — | Q8RQE9 |
| D | — | protein | 1462 | — | Q8RQE8 |
| E | — | protein | 95 | — | Q8RQE7 |
| F | — | protein | 313 | — | Q5SKW1 |
| G | — | protein | 127 | — | A7XX65 |
| H | — | protein | 91 | — | A7XX65 |
| Y | — | protein | 34 | — | A7XXA7 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5XJ0 · T. thermophilus RNA polymerase holoenzyme bound with gp39 and gp76 · the same entry in another collection · chain G against G, TM-score 1.00
- Q8RQE7 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit omega (Q8RQE7) · a predicted model of the same protein · chain E against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SHR6
- Every structure of UniProt Q8RQE9
- Every structure of UniProt Q8RQE8
- Every structure of UniProt Q8RQE7
- Every structure of UniProt Q5SKW1
- Every structure of UniProt A7XX65
- Every structure of UniProt A7XXA7
- Elsewhere: RCSB PDB 5XJ0 · PDBe 5XJ0 · UniProt Q5SHR6 · UniProt Q8RQE9 · UniProt Q8RQE8 · UniProt Q8RQE7 · UniProt Q5SKW1 · UniProt A7XX65 · UniProt A7XXA7
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