MolNFT v1 · #139166 · protein
Crystal structure of rice dwarf virus P5 in complex with GTP and GDP
5X6Z: “Crystal structure of rice dwarf virus P5 in complex with GTP and GDP”. X-ray diffraction, 2 ligands (GTP, GDP). MolNFT v1 #139166 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5X6Z
- Type
- protein
- Length
- 3,128 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- GTP, GDP
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | — | protein | 777 | — | — |
| A | — | protein | 784 | — | — |
| D | — | protein | 791 | — | — |
| B | — | protein | 776 | — | — |
Ligands and binding sites
- GTP · Guanosine-5'-triphosphate · ligand · 4 copies · chains C, A, D, B
- GDP · Guanosine-5'-diphosphate · ligand · 4 copies · chains C, D, A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5X6Z · Crystal structure of Rice Dwarf Virus P5 in complex with GTP and GDP · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5X6Z · PDBe 5X6Z
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