Research workbench
Crystal structure of rice dwarf virus P5 in complex with GTP and GDP
Analyse Crystal structure of rice dwarf virus P5 in complex with GTP and GDP in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5X6Z
- Type
- protein
- Length
- 3,128 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- GTP, GDP
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | — | protein | 777 | — | — |
| A | — | protein | 784 | — | — |
| D | — | protein | 791 | — | — |
| B | — | protein | 776 | — | — |
Ligands and binding sites
- GTP · Guanosine-5'-triphosphate · ligand · 4 copies · chains C, A, D, B
- GDP · Guanosine-5'-diphosphate · ligand · 4 copies · chains C, D, A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5X6Z · Crystal structure of Rice Dwarf Virus P5 in complex with GTP and GDP · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5X6Z · PDBe 5X6Z
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