MolNFT v1 · #138293 · protein
Cytochrome C oxidase from rhodobacter sphaeroides in the reduced state
5WEH: “Cytochrome C oxidase from rhodobacter sphaeroides in the reduced state”. X-ray diffraction, 6 ligands (3PE, HEA, LMU). MolNFT v1 #138293 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5WEH
- Type
- protein
- Length
- 2,211 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P33517, Q03736, P84153, Q8KRK5
- Ligands
- 3PE, HEA, LMU, CU1, MG, CA
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, G | — | protein | 547 | — | P33517 |
| B | — | protein | 254 | — | Q03736 |
| C, I | — | protein | 264 | — | P84153 |
| D | — | protein | 40 | — | Q8KRK5 |
| H | — | protein | 253 | — | Q03736 |
| J | — | protein | 42 | — | Q8KRK5 |
Ligands and binding sites
- 3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine · ligand · 11 copies · chains A, C, D, G, I, J, B, H
- HEA · Heme-A · ligand · 4 copies · chains A, B, G, H
- LMU · Dodecyl-alpha-D-maltoside · ligand · 3 copies · chains G, C
- CU1 · Copper (I) ion · metal · 6 copies · chains A, G, B, H
- MG · Magnesium ion · metal · 2 copies · chains A, B, G, H
- CA · Calcium ion · metal · 2 copies · chains A, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5WEH · Cytochrome c oxidase from Rhodobacter sphaeroides in the reduced state · the same entry in another collection · chain J against J, TM-score 1.00
- P33517 · AlphaFold monomer V2.0 prediction for cytochrome C oxidase subunit 1 (P33517) · a predicted model of the same protein · chain A against A, TM-score 1.00
- Q03736 · AlphaFold monomer V2.0 prediction for cytochrome C oxidase subunit 2 (Q03736) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P33517
- Every structure of UniProt Q03736
- Every structure of UniProt P84153
- Every structure of UniProt Q8KRK5
- Elsewhere: RCSB PDB 5WEH · PDBe 5WEH · UniProt P33517 · UniProt Q03736 · UniProt P84153 · UniProt Q8KRK5
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