Crystal structure of myeloperoxidase subform C (mpo) complex with compound-6 aka 7-(benzyloxy)-1H-[1,2, 3]TRIAZOLO[4,5-D]PYRIMIDIN-5- amine

Structure

x-ray diffraction · 4 distinct chains.

Ligands and binding sites

• AEY · 7-(benzyloxy)-1H-[1,2,3]triazolo[4,5-d]pyrimidin-5-amine · ligand · 2 copies · chains A, B, D, E
• HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B, D, E
• NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 8 copies · chains B, D, E, A
• MAN · alpha-D-mannopyranose · sugar · 4 copies · chains E, B, A, D
• BMA · beta-D-mannopyranose · sugar · 2 copies · chains E, B
• FUC · alpha-L-fucopyranose · sugar · 2 copies · chains B, E
• CA · Calcium ion · metal · 2 copies · chains A, B, D, E
• CL · Chloride ion · ion · 4 copies · chains A, B, D, E

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

• 5WDJ · Crystal structure of myeloperoxidase subform C (mpo) complex with compound-6 aka… · the same entry in another collection · chain E against E, TM-score 1.00
• P05164 · AlphaFold monomer V2.0 prediction for myeloperoxidase (P05164) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P05164
• Elsewhere: RCSB PDB 5WDJ · PDBe 5WDJ · UniProt P05164