MolNFT v1 · #137667 · protein + DNA
CAS1-CAS2 bound to full-site mimic with ni
5VVL: “CAS1-CAS2 bound to full-site mimic with ni”. X-ray diffraction, 1 ligand (NI). MolNFT v1 #137667 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VVL
- Type
- protein + DNA
- Length
- 1,361 residues
- Chains
- 10
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q46896, P45956
- Ligands
- NI
Structure
x-ray diffraction · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 264 | — | Q46896 |
| B | — | protein | 273 | — | Q46896 |
| C | — | protein | 267 | — | Q46896 |
| D | — | protein | 271 | — | Q46896 |
| E | — | protein | 94 | — | P45956 |
| F | — | protein | 95 | — | P45956 |
| G | — | dna | 11 | — | — |
| H | — | dna | 11 | — | — |
| J | — | dna | 41 | — | — |
| K | — | dna | 34 | — | — |
Ligands and binding sites
- NI · Nickel (II) ion · metal · 22 copies · chains A, J, K, H, B, C, D, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VVL · Cas1-Cas2 bound to full-site mimic with Ni · the same entry in another collection · chain K against K, TM-score 1.00
- P45956 · AlphaFold monomer V2.0 prediction for CRISPR-associated endoribonuclease CAS2 (P45956) · a predicted model of the same protein · chain E against A, TM-score 0.97
- Q46896 · AlphaFold monomer V2.0 prediction for CRISPR-associated endonuclease CAS1 (Q46896) · a predicted model of the same protein · chain D against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q46896
- Every structure of UniProt P45956
- Elsewhere: RCSB PDB 5VVL · PDBe 5VVL · UniProt Q46896 · UniProt P45956
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.