MolNFT v1 · #137397 · protein
Glycogen synthase in complex with udp and glucosamine
5VNC: “Glycogen synthase in complex with udp and glucosamine”. X-ray diffraction, 3 ligands (UDP, G6P, GCS). MolNFT v1 #137397 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VNC
- Type
- protein
- Length
- 2,548 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P27472
- Ligands
- UDP, G6P, GCS
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 638 | — | P27472 |
| B | — | protein | 636 | — | P27472 |
| D | — | protein | 636 | — | P27472 |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · 4 copies · chains A, B, C, D
- G6P · 6-O-phosphono-alpha-D-glucopyranose · sugar · 4 copies · chains A, D, B, C
- GCS · 2-amino-2-deoxy-beta-D-glucopyranose · sugar · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VNC · Glycogen synthase in complex with UDP and glucosamine · the same entry in another collection · chain A against A, TM-score 1.00
- P27472 · AlphaFold monomer V2.0 prediction for glycogen [starch] synthase isoform 2 (P27472) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P27472
- Elsewhere: RCSB PDB 5VNC · PDBe 5VNC · UniProt P27472
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