MolNFT v1 · #137311 · protein
Crystal structure of human CD22 ig domains 1-3 in complex with alpha 2-6 sialyllactose
5VKM: “Crystal structure of human CD22 ig domains 1-3 in complex with alpha 2-6 sialyllactose”. X-ray diffraction, 5 ligands (NAG, MAN, BMA). MolNFT v1 #137311 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VKM
- Type
- protein
- Length
- 306 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P20273
- Ligands
- NAG, MAN, BMA, GAL, SIA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 306 | — | P20273 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
- MAN · alpha-D-mannopyranose · sugar · 2 copies · chains A
- BMA · beta-D-mannopyranose · sugar · chains A
- GAL · beta-D-galactopyranose · sugar · chains A
- SIA · N-acetyl-alpha-neuraminic acid · sugar · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VKM · Crystal structure of human CD22 Ig domains 1-3 in complex with alpha 2-6 sialyllactose · the same entry in another collection · chain A against A, TM-score 1.00
- P20273 · AlphaFold monomer V2.0 prediction for B-cell receptor CD22 (P20273) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P20273
- Elsewhere: RCSB PDB 5VKM · PDBe 5VKM · UniProt P20273
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