MolNFT v1 · #137236 · protein
Electrophilic probes for deciphering substrate recognition by O-glcnac transferase
5VIE: “Electrophilic probes for deciphering substrate recognition by O-glcnac transferase”. X-ray diffraction, 3 ligands (UDP, 9C1, 9CD). MolNFT v1 #137236 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VIE
- Type
- protein
- Length
- 1,357 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O15294
- Ligands
- UDP, 9C1, 9CD
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 666 | — | O15294 |
| B, D | — | protein | 12 | — | — |
| C | — | protein | 667 | — | O15294 |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · 2 copies · chains A, B, C, D
- 9C1 · 2-{[(2E)-4-chlorobut-2-enoyl]amino}-2-deoxy-beta-D-glucopyranose · ligand · chains A, B
- 9CD · 2-{[(2E)-but-2-enoyl]amino}-2-deoxy-beta-D-glucopyranose · ligand · chains C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VIE · Electrophilic probes for deciphering substrate recognition by O-GlcNAc transferase · the same entry in another collection · chain A against A, TM-score 1.00
- O15294 · AlphaFold monomer V2.0 prediction for udp-N-acetylglucosamine-- peptide… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O15294
- Elsewhere: RCSB PDB 5VIE · PDBe 5VIE · UniProt O15294
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