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Ligand · 9CD

9CD · 2-{[(2E)-but-2-enoyl]amino}-2-deoxy-beta-D-glucopyranose

9CD, 2-{[(2E)-but-2-enoyl]amino}-2-deoxy-beta-D-glucopyranose (C10 H17 N O6, 247.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
9CD
Formula
C10 H17 N O6
Class
ligand
Structures
2
PDB entries
1

Binding sites

9CD in 2 structures; the first of them:

  • 5VIE · Electrophilic probes for deciphering substrate recognition by O-GlcNAc transferase · 9CD C1102 · binds HIS498, MET501, PRO559, THR560, LEU653, GLY654, PRO656, PHE694 and 6 more
  • 5VIE · Electrophilic probes for deciphering substrate recognition by O-glcnac transferase · 9CD C1102 · binds HIS498, MET501, PRO559, THR560, LEU653, GLY654, PRO656, PHE694 and 6 more

Residues it binds most

HIS 2, PRO 2, THR 2, CYS 2, GLY 2, LEU 2, LYS 2, MET 2, PHE 2, SER 2 (residue and the binding sites it lines).

Found with

  • 9C1 · 2-{[(2E)-4-chlorobut-2-enoyl]amino}-2-deoxy-beta-D-glucopyranose
  • UDP · Uridine-5'-diphosphate

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