MolNFT v1 · #137221 · protein

GLUA2-0XGSG1L bound to zk

5VHW: “GLUA2-0XGSG1L bound to zk”. Electron microscopy, 2 ligands (ZK1, NAG). MolNFT v1 #137221 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5VHW
Type: protein
Length: 3,126 residues
Chains: 4
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P19491, D3ZK93
Ligands: ZK1, NAG

Structure

electron microscopy · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C	—	protein	783	—	P19491, D3ZK93
B, D	—	protein	780	—	P19491, D3ZK93

Ligands and binding sites

ZK1 · {[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid · ligand · 4 copies · chains A, B, C, D
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5VHW · GluA2-0xGSG1L bound to ZK · the same entry in another collection · chain A against A, TM-score 1.00
D3ZK93 · AlphaFold monomer V2.0 prediction for germ cell-specific gene 1-like protein (D3ZK93) · a predicted model of the same protein · chain A against A, TM-score 0.17

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P19491
Every structure of UniProt D3ZK93
Elsewhere: RCSB PDB 5VHW · PDBe 5VHW · UniProt P19491 · UniProt D3ZK93

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