MolNFT v1 · #136804 · protein
Crystal structure of the protein of unknown function of the conserved rid protein family yyfa from yersinia pestis
5V4D: “Crystal structure of the protein of unknown function of the conserved rid protein family yyfa from yersinia…”. X-ray diffraction, 1 ligand (CA). MolNFT v1 #136804 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5V4D
- Type
- protein
- Length
- 759 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q7CGF7
- Ligands
- CA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D, E | — | protein | 127 | — | Q7CGF7 |
| B, C, F | — | protein | 126 | — | Q7CGF7 |
Ligands and binding sites
- CA · Calcium ion · metal · 6 copies · chains A, B, F, E
- ACY · Acetic acid · additive · 7 copies · chains A, C, B, D, F, E
- GOL · Glycerol · additive · 3 copies · chains A, C, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5V4D · Crystal Structure of the Protein of Unknown Function of the Conserved Rid Protein Family… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7CGF7
- Elsewhere: RCSB PDB 5V4D · PDBe 5V4D · UniProt Q7CGF7
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