Research workbench
Crystal structure of the protein of unknown function of the conserved rid protein family yyfa from yersinia pestis
Analyse Crystal structure of the protein of unknown function of the conserved rid… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5V4D
- Type
- protein
- Length
- 759 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q7CGF7
- Ligands
- CA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D, E | — | protein | 127 | — | Q7CGF7 |
| B, C, F | — | protein | 126 | — | Q7CGF7 |
Ligands and binding sites
- CA · Calcium ion · metal · 6 copies · chains A, B, F, E
- ACY · Acetic acid · additive · 7 copies · chains A, C, B, D, F, E
- GOL · Glycerol · additive · 3 copies · chains A, C, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5V4D · Crystal Structure of the Protein of Unknown Function of the Conserved Rid Protein Family… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7CGF7
- Elsewhere: RCSB PDB 5V4D · PDBe 5V4D · UniProt Q7CGF7
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