MolNFT v1 · #135860 · protein
Mical-oxidized actin complex with gelsolin segment 1
5UBO · Actin, alpha skeletal muscle: “Mical-oxidized actin complex with gelsolin segment 1”. X-ray diffraction, 2 ligands (ATP, CA), 4 pockets (best druggability 0.73). MolNFT v1 #135860 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5UBO
- Type
- protein
- Length
- 489 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Actin, alpha skeletal muscle; Gelsolin
- UniProt
- P68135, P06396
- Ligands
- ATP, CA
- Pockets
- 4 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 39% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Actin, alpha skeletal muscle | protein | 364 | 44% helix, 21% strand | P68135 |
| S | Gelsolin | protein | 125 | 24% helix, 34% strand | P06396 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · chains A
- CA · Calcium ion · metal · 3 copies · chains A, S
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains A, S
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 341 | 0.73 | 0.85 | 50 | CA, ATP |
| 2 | 221 | 0.65 | 0.83 | 35 | MPD |
| 3 | 153 | 0.43 | 0.75 | 19 | empty |
| 4 | 62 | 0.27 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–S · 1090 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 5UBO · Mical-oxidized Actin complex with Gelsolin Segment 1 · the same entry in another collection · chain A against A, TM-score 1.00
- P68135 · AlphaFold monomer V2.0 prediction for actin, alpha skeletal muscle (P68135) · a predicted model of the same protein · chain A against A, TM-score 0.98
- P06396 · AlphaFold monomer V2.0 prediction for gelsolin (P06396) · a predicted model of the same protein · chain S against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P68135
- Every structure of UniProt P06396
- Elsewhere: RCSB PDB 5UBO · PDBe 5UBO · UniProt P68135 · UniProt P06396
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