MolNFT v1 · #127689 · protein
Thermolysin in complex with inhibitor JC292
5N3V: “Thermolysin in complex with inhibitor JC292”. X-ray diffraction, 3 ligands (8L5, CA, ZN). MolNFT v1 #127689 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5N3V
- Type
- protein
- Length
- 316 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00800
- Ligands
- 8L5, CA, ZN
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| E | — | protein | 316 | — | P00800 |
Ligands and binding sites
- 8L5 · ~{N}-[(2~{S})-1-(aminomethylamino)-4-methyl-1-oxidanylidene-pentan-2-yl]-(phenylmethoxycarbonylaminomethyl)phosphonamidic acid;hydrogen · ligand · chains E
- CA · Calcium ion · metal · 4 copies · chains E
- ZN · Zinc ion · metal · chains E
- DMS · Dimethyl sulfoxide · additive · 3 copies · chains E
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 2 copies · chains E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5N3V · Thermolysin in complex with inhibitor JC292 · the same entry in another collection · chain E against E, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00800
- Elsewhere: RCSB PDB 5N3V · PDBe 5N3V · UniProt P00800
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