MolNFT v1 · #126876 · protein

Structure of pas-gaf fragment of deinococcus phytochrome by serial femtosecond crystallography

5MG0: “Structure of pas-gaf fragment of deinococcus phytochrome by serial femtosecond crystallography”. X-ray diffraction, 3 ligands (LBV, NI, CL). MolNFT v1 #126876 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5MG0
Type: protein
Length: 322 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9RZA4
Ligands: LBV, NI, CL

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	322	—	Q9RZA4

Ligands and binding sites

LBV · 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid · ligand · chains A
NI · Nickel (II) ion · metal · chains A
CL · Chloride ion · ion · 2 copies · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5MG0 · Structure of PAS-GAF fragment of Deinococcus phytochrome by serial femtosecond… · the same entry in another collection · chain A against A, TM-score 1.00
Q9RZA4 · AlphaFold monomer V2.0 prediction for bacteriophytochrome (Q9RZA4) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

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Every structure of UniProt Q9RZA4
Elsewhere: RCSB PDB 5MG0 · PDBe 5MG0 · UniProt Q9RZA4

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