MolNFT v1 · #126595 · protein
Blastochloris viridis photosynthetic reaction center synchrotron structure
5M7L: “Blastochloris viridis photosynthetic reaction center synchrotron structure”. X-ray diffraction, 10 ligands (HEC, BCL, MPG). MolNFT v1 #126595 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5M7L
- Type
- protein
- Length
- 1,171 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P07173, P06009, P06010, P06008
- Ligands
- HEC, BCL, MPG, BPB, DGA, MQ7, NS5, OTP, FE2, PO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 332 | — | P07173 |
| B | — | protein | 273 | — | P06009 |
| C | — | protein | 323 | — | P06010 |
| D | — | protein | 243 | — | P06008 |
Ligands and binding sites
- HEC · Heme C · ligand · 4 copies · chains A, C
- BCL · Bacteriochlorophyll A · ligand · 4 copies · chains B, C
- MPG · [(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate · ligand · 3 copies · chains B, C
- BPB · Bacteriopheophytin B · ligand · 2 copies · chains B, C
- DGA · Diacyl glycerol · ligand · chains A, B, C
- MQ7 · Menaquinone-7 · ligand · chains B, C
- NS5 · 15-cis-1,2-dihydroneurosporene · ligand · chains C
- OTP · (2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-octamethyldotriaconta-2,6,10,14,18,22,26,30-octaenyl trihydrogen diphosphate · ligand · chains B, C, D
- FE2 · Fe (II) ion · metal · chains B, C
- PO4 · Phosphate ion · ion · 2 copies · chains C, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5M7L · Blastochloris viridis photosynthetic reaction center synchrotron structure · the same entry in another collection · chain D against D, TM-score 1.00
- P07173 · AlphaFold monomer V2.0 prediction for photosynthetic reaction center cytochrome C subunit… · a predicted model of the same protein · chain A against A, TM-score 1.00
- P06009 · AlphaFold monomer V2.0 prediction for reaction center protein L chain (P06009) · a predicted model of the same protein · chain B against A, TM-score 0.99
- P06010 · AlphaFold monomer V2.0 prediction for reaction center protein M chain (P06010) · a predicted model of the same protein · chain C against A, TM-score 0.98
- P06008 · AlphaFold monomer V2.0 prediction for reaction center protein H chain (P06008) · a predicted model of the same protein · chain D against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07173
- Every structure of UniProt P06009
- Every structure of UniProt P06010
- Every structure of UniProt P06008
- Elsewhere: RCSB PDB 5M7L · PDBe 5M7L · UniProt P07173 · UniProt P06009 · UniProt P06010 · UniProt P06008
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.