MolNFT v1 · #126578 · protein + RNA
Structure of the human srp S domain with SRP72 RNA-binding domain
5M73: “Structure of the human srp S domain with SRP72 RNA-binding domain”. X-ray diffraction, 2 ligands (MG, K). MolNFT v1 #126578 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5M73
- Type
- protein + RNA
- Length
- 984 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P09132, Q9UHB9, O76094
- Ligands
- MG, K
Structure
x-ray diffraction · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, E | — | rna | 145 | — | — |
| B | — | protein | 108 | — | P09132 |
| C | — | protein | 197 | — | Q9UHB9 |
| D | — | protein | 47 | — | O76094 |
| F | — | protein | 104 | — | P09132 |
| G | — | protein | 197 | — | Q9UHB9 |
| H | — | protein | 41 | — | O76094 |
Ligands and binding sites
- MG · Magnesium ion · metal · 45 copies · chains A, C, E
- K · Potassium ion · metal · 10 copies · chains A, D, E
- GOL · Glycerol · additive · 9 copies · chains A, B, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5M73 · Structure of the human SRP S domain with SRP72 RNA-binding domain · the same entry in another collection · chain H against H, TM-score 1.00
- Q9UHB9 · AlphaFold monomer V2.0 prediction for signal recognition particle subunit SRP68 (Q9UHB9) · a predicted model of the same protein · chain C against A, TM-score 0.98
- P09132 · AlphaFold monomer V2.0 prediction for signal recognition particle 19 kda protein (P09132) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P09132
- Every structure of UniProt Q9UHB9
- Every structure of UniProt O76094
- Elsewhere: RCSB PDB 5M73 · PDBe 5M73 · UniProt P09132 · UniProt Q9UHB9 · UniProt O76094
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