MolNFT v1 · #126273 · protein
Structure of the minimal RBM7 - ZCCHC8 complex
5LXR · RNA-binding protein 7: “Structure of the minimal RBM7 - ZCCHC8 complex”. X-ray diffraction, 3 ligands (SM, BR, CL). MolNFT v1 #126273 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LXR
- Type
- protein
- Length
- 120 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA-binding protein 7; Zinc finger cchc domain-containing protein 8
- UniProt
- Q9Y580, Q6NZY4
- Ligands
- SM, BR, CL
Structure
x-ray diffraction · 2 distinct chains · 33% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA-binding protein 7 | protein | 80 | 26% helix, 31% strand | Q9Y580 |
| B | Zinc finger cchc domain-containing protein 8 | protein | 40 | 48% helix, 0% strand | Q6NZY4 |
Ligands and binding sites
- SM · Samarium (III) ion · metal · 3 copies · chains A
- BR · Bromide ion · ion · 4 copies · chains A, B
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 948 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 5LXR · Structure of the minimal RBM7 - ZCCHC8 Complex · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Y580 · AlphaFold monomer V2.0 prediction for RNA-binding protein 7 (Q9Y580) · a predicted model of the same protein · chain A against A, TM-score 0.96
- Q6NZY4 · AlphaFold monomer V2.0 prediction for zinc finger cchc domain- containing protein 8… · a predicted model of the same protein · chain B against A, TM-score 0.76
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y580
- Every structure of UniProt Q6NZY4
- Elsewhere: RCSB PDB 5LXR · PDBe 5LXR · UniProt Q9Y580 · UniProt Q6NZY4
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