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Ligand · SM

SM · Samarium (III) ion

SM, Samarium (III) ion (Sm +3, 150.4 g/mol), in the MolNFT structures on GenesisL1: bound in 23 records (16 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
SM
Formula
Sm +3
Class
metal
Structures
23
PDB entries
16

Binding sites

SM in 23 structures; the first of them:

  • 5G3S · The structure of the L-tryptophan oxidase VioA from Chromobacterium violaceum - Samarium… · SM A419 · binds GLU324, ARG35, ARG201
  • 5K97 · Flap endonuclease 1 (FEN1) D233N with cleaved product fragment and Sm3+ · SM A401 · binds GLY2, GLU160, ASP181, ASN233, DT7
  • 5KTJ · Crystal structure of Pistol, a class of self-cleaving ribozyme · SM A101 · binds G40, C41, G42, G43
  • 5LXR · Structure of the minimal RBM7 - ZCCHC8 Complex · SM A101 · binds ASP9, GLU60
  • 5NSJ · GP1 receptor-binding domain from Whitewater Arroyo mammarenavirus · SM A305 · binds ASN134, ASP136, GLU137
  • 6P74 · OLD nuclease from Thermus Scotoductus · SM A614 · binds ASP431, GLU480

Residues it binds most

GLU 92, ASP 52, ASN 17, HIS 13, G 10, GLY 14, DT 10, LYS 8, C 8, A 7 (residue and the binding sites it lines).

Found with

  • EDO · 1,2-ethanediol
  • K · Potassium ion
  • NA · Sodium ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • CL · Chloride ion
  • ACT · Acetate ion
  • AMP · Adenosine monophosphate
  • NCO · Cobalt hexammine(iii)
  • CA · Calcium ion
  • MG · Magnesium ion
  • PT · Platinum (II) ion
  • MAN · alpha-D-mannopyranose

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