MolNFT v1 · #124643 · protein + DNA
Wilms tumor protein (WT1) ZNF2-4 Q369H in complex with formylated DNA
5KL4: “Wilms tumor protein (WT1) ZNF2-4 Q369H in complex with formylated DNA”. X-ray diffraction, 3 ligands (ZN, CA, NA). MolNFT v1 #124643 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KL4
- Type
- protein + DNA
- Length
- 220 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P19544
- Ligands
- ZN, CA, NA
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 90 | — | P19544 |
| B, E | — | dna | 11 | — | — |
| C, F | — | dna | 11 | — | — |
| D | — | protein | 86 | — | P19544 |
Ligands and binding sites
- ZN · Zinc ion · metal · 6 copies · chains A, D
- CA · Calcium ion · metal · 2 copies · chains A, D
- NA · Sodium ion · metal · chains F
- EDO · 1,2-ethanediol · additive · 2 copies · chains A, B, D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KL4 · Wilms Tumor Protein (WT1) ZnF2-4 Q369H in complex with formylated DNA · the same entry in another collection · chain F against F, TM-score 1.00
- P19544 · AlphaFold monomer V2.0 prediction for wilms tumor protein (P19544) · a predicted model of the same protein · chain D against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P19544
- Elsewhere: RCSB PDB 5KL4 · PDBe 5KL4 · UniProt P19544
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