MolNFT v1 · #120405 · protein

Galectin-8 N-terminal domain carbohydrate recognition domain

5GZF: “Galectin-8 N-terminal domain carbohydrate recognition domain”. X-ray diffraction, 4 ligands (BGC, GAL, NA). MolNFT v1 #120405 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5GZF
Type: protein
Length: 150 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Galectin-8
UniProt: O00214
Ligands: BGC, GAL, NA, NI

Structure

x-ray diffraction · 1 distinct chain · 2% helix, 54% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Galectin-8	protein	150	2% helix, 54% strand	O00214

Ligands and binding sites

BGC · beta-D-glucopyranose · sugar · chains A
GAL · beta-D-galactopyranose · sugar · chains A
NA · Sodium ion · metal · chains A
NI · Nickel (II) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5GZF · Galectin-8 N-terminal domain carbohydrate recognition domain · the same entry in another collection · chain A against A, TM-score 1.00
O00214 · AlphaFold monomer V2.0 prediction for galectin-8 (O00214) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O00214
Elsewhere: RCSB PDB 5GZF · PDBe 5GZF · UniProt O00214

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.