MolNFT v1 · #116697 · protein

Corkscrew assembly of SOD1 residues 28-38

5DLI · Superoxide dismutase [cu-zn]: “Corkscrew assembly of SOD1 residues 28-38”. X-ray diffraction, 1 ligand (IOD). MolNFT v1 #116697 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5DLI
Type: protein
Length: 88 residues
Chains: 8
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Superoxide dismutase [cu-zn]
EC: 1.15.1.1
UniProt: P00441
Ligands: IOD

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G, H	Superoxide dismutase [cu-zn] (EC 1.15.1.1)	protein	11	0% helix, 45% strand	P00441

Ligands and binding sites

IOD · Iodide ion · ion · 2 copies · chains D, E
GOL · Glycerol · additive · chains B, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

19 interfaces between chains.

B–C · 510 Å² buried · 10 hydrogen bonds · protein-protein
F–G · 501 Å² buried · 9 hydrogen bonds · protein-protein
D–E · 453 Å² buried · 10 hydrogen bonds · protein-protein
A–B · 374 Å² buried · 12 hydrogen bonds · protein-protein
G–H · 368 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

5DLI · Corkscrew assembly of SOD1 residues 28-38 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00441
Elsewhere: RCSB PDB 5DLI · PDBe 5DLI · UniProt P00441

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