Research workbench
Corkscrew assembly of SOD1 residues 28-38
Analyse Corkscrew assembly of SOD1 residues 28-38 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5DLI
- Type
- protein
- Length
- 88 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Superoxide dismutase [cu-zn]
- EC
- 1.15.1.1
- UniProt
- P00441
- Ligands
- IOD
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H | Superoxide dismutase [cu-zn] (EC 1.15.1.1) | protein | 11 | 0% helix, 45% strand | P00441 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
19 interfaces between chains.
- B–C · 510 Ų buried · 10 hydrogen bonds · protein-protein
- F–G · 501 Ų buried · 9 hydrogen bonds · protein-protein
- D–E · 453 Ų buried · 10 hydrogen bonds · protein-protein
- A–B · 374 Ų buried · 12 hydrogen bonds · protein-protein
- G–H · 368 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 5DLI · Corkscrew assembly of SOD1 residues 28-38 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00441
- Elsewhere: RCSB PDB 5DLI · PDBe 5DLI · UniProt P00441
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