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MolNFT v1 · #11501 · protein

The crystal structure of the binary complex between folinic acid (leucovorin) and E. COLI dihydrofolate reductase

1JOM: “The crystal structure of the binary complex between folinic acid (leucovorin) and E. COLI dihydrofolate…”. X-ray diffraction, 3 ligands (FFO, CA, CL), 1 pocket (best druggability 0.71). MolNFT v1 #11501 on GenesisL1: 3D structure…

PDB
1JOM
Type
protein
Length
159 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Dihydrofolate reductase
EC
1.5.1.3
UniProt
P0ABQ4
Ligands
FFO, CA, CL
Pockets
1 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 30% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ADihydrofolate reductase (EC 1.5.1.3)protein15925% helix, 30% strandP0ABQ4

Ligands and binding sites

  • FFO · N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid · ligand · chains A
  • CA · Calcium ion · metal · chains A
  • CL · Chloride ion · ion · chains A
  • EOH · Ethanol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
12280.710.8627FFO

Compared structures

  • 1JOM · The crystal structure of the binary complex between folinic acid (leucovorin) and E. COLI… · the same entry in another collection · chain A against A, TM-score 1.00
  • P0ABQ4 · AlphaFold monomer V2.0 prediction for dihydrofolate reductase (P0ABQ4) · a predicted model of the same protein · chain A against A, TM-score 0.97

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