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The crystal structure of the binary complex between folinic acid (leucovorin) and E. COLI dihydrofolate reductase

Analyse The crystal structure of the binary complex between folinic acid (leucovorin)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
1JOM
Type
protein
Length
159 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Dihydrofolate reductase
EC
1.5.1.3
UniProt
P0ABQ4
Ligands
FFO, CA, CL
Pockets
1 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 30% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ADihydrofolate reductase (EC 1.5.1.3)protein15925% helix, 30% strandP0ABQ4

Ligands and binding sites

  • FFO · N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid · ligand · chains A
  • CA · Calcium ion · metal · chains A
  • CL · Chloride ion · ion · chains A
  • EOH · Ethanol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
12280.710.8627FFO

Compared structures

  • 1JOM · The crystal structure of the binary complex between folinic acid (leucovorin) and E. COLI… · the same entry in another collection · chain A against A, TM-score 1.00
  • P0ABQ4 · AlphaFold monomer V2.0 prediction for dihydrofolate reductase (P0ABQ4) · a predicted model of the same protein · chain A against A, TM-score 0.97

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